PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G112200.3
Common NameB456_010G112200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 448aa    MW: 47719.7 Da    PI: 9.6064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G112200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.5e-06269295531
                         HHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas 31 
                         h+++Er RR ri +++  L+el+P+a 
  Gorai.010G112200.3 269 HSIAERLRRVRIAERMKALQELVPNAN 295
                         99***********************74 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.34E-6262299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-4262303No hitNo description
PROSITE profilePS508889.235264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-6266298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT  60
QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET  120
GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG  180
RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS  240
GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKVLSM  300
SRLGGAAAVA PLVSEGGGDC IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED  360
MGSAMQYLQE KGLCLMPISL ATAISSATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP  420
SMSVLTVQSA TMGNGGLEGG AASVSKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364320.0KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451348.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH69
SwissprotQ9ZUG92e-60BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D2R6000.0A0A0D2R600_G
STRINGPOPTR_0018s11800.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-49LJRHL1-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]